F6RQR6_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6RQR6_CIOIN

RING-type domain-containing protein. (401 aa)

Predicted Functional Partners:

LOC100180533

0.709

F7B314_CIOIN

0.649

LOC100185384

0.551

H2XJL6_CIOIN

0.516

F6ZGU5_CIOIN

0.504

F6UIG7_CIOIN

0.500

F7BMH5_CIOIN

0.476

LOC100185453

0.453

F6YM26_CIOIN

0.430

F6V8F4_CIOIN

0.430

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RQR6_CIOIN	F6UIG7_CIOIN	ENSCINP00000001168	ENSCINP00000022837	RING-type domain-containing protein.	CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.500
F6RQR6_CIOIN	F6V8F4_CIOIN	ENSCINP00000001168	ENSCINP00000022816	RING-type domain-containing protein.	Uncharacterized protein.	0.430
F6RQR6_CIOIN	F6YM26_CIOIN	ENSCINP00000001168	ENSCINP00000018681	RING-type domain-containing protein.	Uncharacterized protein.	0.430
F6RQR6_CIOIN	F6ZGU5_CIOIN	ENSCINP00000001168	ENSCINP00000012523	RING-type domain-containing protein.	Uncharacterized protein.	0.504
F6RQR6_CIOIN	F7B314_CIOIN	ENSCINP00000001168	ENSCINP00000005320	RING-type domain-containing protein.	Uncharacterized protein.	0.649
F6RQR6_CIOIN	F7BMH5_CIOIN	ENSCINP00000001168	ENSCINP00000024432	RING-type domain-containing protein.	UBX domain-containing protein.	0.476
F6RQR6_CIOIN	H2XJL6_CIOIN	ENSCINP00000001168	ENSCINP00000029848	RING-type domain-containing protein.	Uncharacterized protein.	0.516
F6RQR6_CIOIN	LOC100180533	ENSCINP00000001168	ENSCINP00000000579	RING-type domain-containing protein.	28S ribosomal protein S23, mitochondrial-like.	0.709
F6RQR6_CIOIN	LOC100185384	ENSCINP00000001168	ENSCINP00000010307	RING-type domain-containing protein.	ubiquitin-60S ribosomal protein L40.	0.551
F6RQR6_CIOIN	LOC100185453	ENSCINP00000001168	ENSCINP00000014090	RING-type domain-containing protein.	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family.	0.453
F6UIG7_CIOIN	F6RQR6_CIOIN	ENSCINP00000022837	ENSCINP00000001168	CARM1 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	RING-type domain-containing protein.	0.500
F6V8F4_CIOIN	F6RQR6_CIOIN	ENSCINP00000022816	ENSCINP00000001168	Uncharacterized protein.	RING-type domain-containing protein.	0.430
F6V8F4_CIOIN	F6YM26_CIOIN	ENSCINP00000022816	ENSCINP00000018681	Uncharacterized protein.	Uncharacterized protein.	0.456
F6YM26_CIOIN	F6RQR6_CIOIN	ENSCINP00000018681	ENSCINP00000001168	Uncharacterized protein.	RING-type domain-containing protein.	0.430
F6YM26_CIOIN	F6V8F4_CIOIN	ENSCINP00000018681	ENSCINP00000022816	Uncharacterized protein.	Uncharacterized protein.	0.456
F6ZGU5_CIOIN	F6RQR6_CIOIN	ENSCINP00000012523	ENSCINP00000001168	Uncharacterized protein.	RING-type domain-containing protein.	0.504
F6ZGU5_CIOIN	LOC100180533	ENSCINP00000012523	ENSCINP00000000579	Uncharacterized protein.	28S ribosomal protein S23, mitochondrial-like.	0.646
F7B314_CIOIN	F6RQR6_CIOIN	ENSCINP00000005320	ENSCINP00000001168	Uncharacterized protein.	RING-type domain-containing protein.	0.649
F7B314_CIOIN	LOC100180533	ENSCINP00000005320	ENSCINP00000000579	Uncharacterized protein.	28S ribosomal protein S23, mitochondrial-like.	0.741
F7BMH5_CIOIN	F6RQR6_CIOIN	ENSCINP00000024432	ENSCINP00000001168	UBX domain-containing protein.	RING-type domain-containing protein.	0.476