Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6QSD6_CIOINSde2_N_Ubi domain-containing protein. (246 aa)    
Predicted Functional Partners:
F6W8G0_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.984
LOC100181928
Uncharacterized protein.
    
 
 0.980
F6QBK7_CIOIN
Uncharacterized protein.
    
 0.979
H2XTS0_CIOIN
Uncharacterized protein.
    
 0.976
F6TYS5_CIOIN
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.973
F6V9P3_CIOIN
Uncharacterized protein.
    
  0.970
zf(cchc)-12
Zinc finger protein (CCHC)-12.
   
 0.969
zf(c2h2)-86
Spliceosome-associated protein CWC15 homolog.
    
 
 0.957
F6QW82_CIOIN
Uncharacterized protein.
     
 0.955
F6W453_CIOIN
Uncharacterized protein.
    
 
 0.946
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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