Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6Q587_CIOINUncharacterized protein. (86 aa)    
Predicted Functional Partners:
LOC100181928
Uncharacterized protein.
   
 0.946
LOC100177488
Protein BUD31 homolog.
   
 0.942
F6SBF1_CIOIN
Uncharacterized protein.
    
 0.938
zf(c3h)-12
Uncharacterized protein.
   
 0.922
LOC100183284
SKIP_SNW domain-containing protein.
    
 0.910
F6ZP18_CIOIN
Uncharacterized protein.
    
 0.908
F6RKQ2_CIOIN
Uncharacterized protein.
    
 0.904
LOC113474384
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  0.890
F6W8G0_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 0.879
F6UYA6_CIOIN
Uncharacterized protein.
    
 0.873
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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