Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100178560Pulmonary surfactant-associated protein D-like. (239 aa)    
Predicted Functional Partners:
F6TM76_CIOIN
Uncharacterized protein.
    
  0.517
F7AGV3_CIOIN
Uncharacterized protein; Belongs to the peptidase S1 family.
   
 0.513
F6R9Z3_CIOIN
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
 0.513
LOC100180326
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.513
H2XXY9_CIOIN
Uncharacterized protein.
      
 0.511
LOC100177359
Uncharacterized protein LOC100177359.
    
 0.506
F6UWQ4_CIOIN
Fibrinogen C-terminal domain-containing protein.
   
 0.471
LOC113474037
Complement component C6-like isoform X2.
   
  
 0.418
F6R7P6_CIOIN
MACPF domain-containing protein.
   
  
 0.418
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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