Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
F6PGW6_CIOINTr-type G domain-containing protein. (457 aa)    
Predicted Functional Partners:
LOC100178387
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
   
 
 0.926
F6XKZ0_CIOIN
EFG_C domain-containing protein.
 
      0.900
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.809
F6PPC0_CIOIN
Uncharacterized protein.
   
 
 0.774
F6QDH2_CIOIN
GST C-terminal domain-containing protein.
   
 
 0.774
H2XV19_CIOIN
RRF domain-containing protein.
  
 
 0.756
LOC100186763
60S ribosomal protein L5.
  
 0.742
H2XSS0_CIOIN
eIF-5a domain-containing protein.
  
 
 0.728
LOC100183019
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
  
 0.724
LOC100177507
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.724
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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