STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100179890Uncharacterized protein. (828 aa)    
Predicted Functional Partners:
H2Y1E3_CIOIN
AAA_lid_1 domain-containing protein.
 
     0.921
H2XU58_CIOIN
AAA_9 domain-containing protein.
 
     0.919
H2XZK1_CIOIN
DHC_N2 domain-containing protein.
 
     0.919
H2XPT3_CIOIN
Uncharacterized protein.
 
      0.893
H2XSR1_CIOIN
Uncharacterized protein.
 
      0.879
H2Y3B9_CIOIN
AAA_6 domain-containing protein.
 
      0.874
F7BKE7_CIOIN
Uncharacterized protein.
 
      0.872
H2XVW0_CIOIN
Dynein_AAA_lid domain-containing protein.
 
      0.868
F6UZT3_CIOIN
Uncharacterized protein.
 
  
  0.859
F7A1G4_CIOIN
AAA_6 domain-containing protein.
 
      0.844
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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