STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irf-like-3IRF tryptophan pentad repeat domain-containing protein. (530 aa)    
Predicted Functional Partners:
F6R7T5_CIOIN
Uncharacterized protein.
    
 0.502
F6SVB2_CIOIN
Acetyltransf_13 domain-containing protein.
   
  
 0.469
F6R544_CIOIN
Uncharacterized protein.
   
 0.467
F6ZEW6_CIOIN
Death domain-containing protein.
   
 0.467
F6S4F7_CIOIN
Non-specific serine/threonine protein kinase.
   
 0.459
ikk-epsilon
ikappaB kinase isoform X1.
    
 0.408
H2XVA2_CIOIN
Uncharacterized protein.
  
  
  0.406
F6PZE7_CIOIN
ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily.
      
 0.402
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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