STRINGSTRING
bra protein (Ciona intestinalis) - STRING interaction network
"bra" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
braTranscription factor protein (439 aa)    
Predicted Functional Partners:
fkh
Transcription factor protein (633 aa)
     
 
  0.847
ENSCING00000009221
Uncharacterized protein (572 aa)
       
    0.754
pax6
Homeobox transcription factor Pax6 (497 aa)
     
 
  0.710
tcf/lef
Transcription factor protein (351 aa)
       
  0.701
smad2/3b
Smad2/3b protein (426 aa)
       
 
  0.693
gsc
Transcription factor protein (257 aa)
       
 
  0.677
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
       
 
  0.674
foxa-b
Uncharacterized protein (235 aa)
     
 
  0.660
ENSCING00000008562
Transforming growth factor beta superfamily signaling ligand precursor (385 aa)
       
 
  0.644
not
Uncharacterized protein (146 aa)
       
 
  0.588
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (13%) [HD]