STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100182403Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family. (906 aa)    
Predicted Functional Partners:
LOC100180214
Integrin beta; Belongs to the integrin beta chain family.
   
 0.962
F6QBL6_CIOIN
Integrin beta; Belongs to the integrin beta chain family.
   
 0.948
F6TTH0_CIOIN
Uncharacterized protein.
     
 0.928
LOC100182056
Integrin beta; Belongs to the integrin beta chain family.
   
 0.920
F6YWQ8_CIOIN
C-type lectin domain-containing protein.
   
 
 0.909
H2XQA4_CIOIN
Uncharacterized protein.
     
  0.902
F6QRL6_CIOIN
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
  
  
0.732
F6XNC0_CIOIN
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
  
  
0.732
F7ALM5_CIOIN
Uncharacterized protein.
    
 0.718
H2XYV2_CIOIN
Integrin_alpha2 domain-containing protein.
     
0.692
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.