Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100181568Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (216 aa)    
Predicted Functional Partners:
LOC100184047
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.999
LOC100177507
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 0.999
LOC100175749
60S ribosomal protein L26.
  
 0.999
LOC100185869
40S ribosomal protein S11-like.
  
 
 0.999
LOC100182402
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
  
 0.999
r27a
R27a protein isoform X1.
   
 0.999
LOC100186763
60S ribosomal protein L5.
  
 0.999
LOC100186345
60S ribosomal protein L7a.
  
 0.999
LOC100184647
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 
 0.999
LOC100180716
60S ribosomal protein L31.
  
 0.999
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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