Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100181983PRKC apoptosis WT1 regulator protein-like. (304 aa)    
Predicted Functional Partners:
LOC100187432
39S ribosomal protein L11, mitochondrial-like; Belongs to the universal ribosomal protein uL11 family.
      
 0.835
H2XXN7_CIOIN
Uncharacterized protein.
      
 0.828
Meta3
Uncharacterized protein.
    
   0.732
F6XM19_CIOIN
Uncharacterized protein.
      
 0.656
F6SX96_CIOIN
Uncharacterized protein.
      
 0.584
LOC100177611
Vesicle-associated membrane protein 4-like.
      
 0.568
F6YJ99_CIOIN
CUE domain-containing protein.
      
 0.545
F6RMP9_CIOIN
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
      
 0.530
H2Y1J7_CIOIN
RRM domain-containing protein.
      
 0.517
Syt1
Uncharacterized protein.
      
 0.502
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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