STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6U144_CIOINUncharacterized protein. (789 aa)    
Predicted Functional Partners:
LOC100182553
AP-2 complex subunit mu isoform X3; Belongs to the adaptor complexes medium subunit family.
   
 
 0.620
LOC100187027
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
   
 
  0.588
LOC100182001
Phosphatidylinositol-binding clathrin assembly protein LAP-like.
   
 
  0.579
Syt1
Uncharacterized protein.
   
  0.497
F6VYL7_CIOIN
Uncharacterized protein.
    
 
 0.494
ekn1
EKN1 protein.
    
 0.487
F7ABF6_CIOIN
AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
 0.463
LOC100175472
Ubiquilin-1.
    
  0.458
H2XUP2_CIOIN
V-SNARE coiled-coil homology domain-containing protein.
   
 
  0.453
LOC100182146
Uncharacterized protein.
    
 0.420
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (26%) [HD]