Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180734Mitochondrial import inner membrane translocase subunit Tim22-like. (193 aa)    
Predicted Functional Partners:
H2XT55_CIOIN
Uncharacterized protein.
   
 0.990
H2XZW2_CIOIN
zf-Tim10_DDP domain-containing protein.
   
 0.959
LOC100187325
Mitochondrial import inner membrane translocase subunit Tim23.
   
 0.921
LOC100185261
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8.
   
 
 0.914
H2XWM7_CIOIN
zf-Tim10_DDP domain-containing protein.
   
 0.908
LOC100183394
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7-like.
   
 
 0.877
H2XN49_CIOIN
Uncharacterized protein.
   
 
 0.845
LOC100181904
Rhomboid protein 1, mitochondrial.
      
 0.815
F6SH39_CIOIN
Uncharacterized protein.
    
 0.766
Pax6
Uncharacterized protein.
    
 0.766
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.