STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180734Mitochondrial import inner membrane translocase subunit Tim22-like. (193 aa)    
Predicted Functional Partners:
H2XZW2_CIOIN
zf-Tim10_DDP domain-containing protein.
   
 0.978
H2XWM7_CIOIN
zf-Tim10_DDP domain-containing protein.
   
 0.940
H2XT55_CIOIN
Uncharacterized protein.
   
 0.915
LOC100187325
Mitochondrial import inner membrane translocase subunit Tim23.
   
 0.894
LOC100180381
Mitochondrial import inner membrane translocase subunit Tim17-B-like.
   
 
 0.818
F6SH39_CIOIN
Uncharacterized protein.
    
 0.768
Pax6
Uncharacterized protein.
    
 0.768
Pax3/7-like
Homeobox domain-containing protein.
    
 0.768
LOC100180725
Succinate dehydrogenase [ubiquinone] cytochrome b small subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q); Belongs to the CybS family.
   
 0.750
H2XN49_CIOIN
Uncharacterized protein.
   
 
 0.724
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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