Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F7BAT7_CIOINProhibitin. (271 aa)    
Predicted Functional Partners:
F6XRG3_CIOIN
Prohibitin.
   
 0.999
F6XKQ1_CIOIN
PHB domain-containing protein.
   
 
 0.959
F7AHK4_CIOIN
AAA domain-containing protein.
   
 0.913
F6Y8H4_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.906
F7AIB9_CIOIN
Uncharacterized protein.
   
  0.902
Raf1
Uncharacterized protein.
    
 0.856
LOC100184654
Voltage-dependent anion-selective channel protein 2.
   
 
 0.837
LOC100177022
ATPase family AAA domain-containing protein 3-like.
   
 
 0.811
COII
Cytochrome c oxidase subunit 2; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. Subunit 2 transfers the electrons from cytochrome c via its binuclear copper A center to the bimetallic center of the catalytic subunit 1.
   
 
 0.797
LOC100183052
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial; Belongs to the complex I 30 kDa subunit family.
   
 
 0.794
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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