Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178230Serine incorporator 5-like. (461 aa)    
Predicted Functional Partners:
LOC104265369
Serine incorporator 1-like isoform X2.
  
 
0.914
F6ZUK0_CIOIN
DNA_mis_repair domain-containing protein.
 
    
 0.687
F7AZY1_CIOIN
Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.
      
 0.662
F6YYY1_CIOIN
Uncharacterized protein.
      
 0.646
F6Y0T9_CIOIN
HD domain-containing protein.
      
 0.628
LOC100184133
Uncharacterized protein.
      
 0.623
F6XGL3_CIOIN
Non-specific serine/threonine protein kinase.
      
 0.584
Q1RPY5_CIOIN
Zinc finger protein.
    
 
 0.528
F6T377_CIOIN
Uncharacterized protein.
      
 0.527
F6UYH8_CIOIN
Tau95_N domain-containing protein.
      
 0.504
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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