Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
F6YLQ9_CIOINAA_TRNA_LIGASE_II domain-containing protein. (409 aa)    
Predicted Functional Partners:
LOC100178583
Tyrosine--tRNA ligase.
  
 0.978
H2XQX5_CIOIN
WHEP-TRS domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.959
SYIM_CIOIN
Probable isoleucine--tRNA ligase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.954
F6T8P3_CIOIN
Uncharacterized protein.
  
 0.948
F7B2R9_CIOIN
tRNA-synt_1c domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.934
F7AKQ3_CIOIN
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.927
LOC100185662
Lysine--tRNA ligase.
  
 0.927
LOC100179750
Probable asparagine--tRNA ligase, mitochondrial.
  
 0.926
F6Z3S0_CIOIN
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.924
F6XK10_CIOIN
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.902
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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