STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Y110_CIOINUncharacterized protein. (269 aa)    
Predicted Functional Partners:
LOC100179315
Aspartate aminotransferase.
     
 0.831
LOC100184965
Aspartate aminotransferase.
     
 0.831
F6PG92_CIOIN
Uncharacterized protein.
   
 
  0.803
LOC100180021
Glutamine amidotransferase type-2 domain-containing protein.
     
  0.800
LOC100182906
Uncharacterized protein.
     
  0.800
LOC100182260
Aspartoacylase-like.
     
  0.800
LOC100185185
Asparagine synthetase [glutamine-hydrolyzing].
     
  0.800
F6QF37_CIOIN
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.
     
  0.800
F6PHH7_CIOIN
ATP-grasp domain-containing protein.
     
  0.800
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (24%) [HD]