STRINGSTRING
trh protein (Ciona intestinalis) - STRING interaction network
"trh" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trhTranscription factor protein (753 aa)    
Predicted Functional Partners:
arnt
Transcription factor protein (545 aa)
     
0.967
ENSCING00000022669
Uncharacterized protein (167 aa)
       
  0.888
ENSCING00000001903
Uncharacterized protein (324 aa)
       
  0.838
cbp
Uncharacterized protein (1533 aa)
       
  0.825
ENSCING00000012576
Uncharacterized protein (666 aa)
       
  0.683
ENSCING00000009221
Uncharacterized protein (572 aa)
       
  0.599
cul2
Uncharacterized protein (744 aa)
       
  0.524
ENSCING00000024104
Uncharacterized protein (313 aa)
       
  0.519
ENSCING00000021729
Uncharacterized protein (215 aa)
       
  0.519
ENSCING00000021810
Uncharacterized protein (375 aa)
       
  0.519
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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