Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxESoxE protein. (808 aa)    
Predicted Functional Partners:
F6W2W8_CIOIN
Runt domain-containing protein.
   
 0.903
F6SH39_CIOIN
Uncharacterized protein.
   
 0.841
Gataa
Uncharacterized protein.
    
 0.830
Fgf9/16/20
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
     
 0.785
ftzf
Nuclear receptor isoform X1.
    
 0.764
LOC100187231
Synaptonemal complex protein 3-like.
    
 0.748
LOC100101826
Uncharacterized protein.
    
 0.731
LOC779004
Transcription factor protein.
    
 0.709
LOC100187103
Tetraspanin.
      
 0.694
Foxp
Fork-head domain-containing protein.
    
 0.693
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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