Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100175630Protein D2. (177 aa)    
Predicted Functional Partners:
Raf1
Uncharacterized protein.
    
 0.940
F6Z599_CIOIN
Uncharacterized protein.
   
 
 0.744
LOC100175627
Macrophage migration inhibitory factor-like.
   
 
 0.743
LOC100178933
Uncharacterized protein LOC100178933.
   
 
 0.711
F7BL09_CIOIN
Uncharacterized protein.
   
 
 0.708
LOC100176475
RNase III domain-containing protein.
   
 
 0.703
F7APG8_CIOIN
Uncharacterized protein.
   
 
 0.699
F6PYN6_CIOIN
CCDC92 domain-containing protein.
      
 0.695
H2XPC5_CIOIN
Ribosomal_L16 domain-containing protein.
   
 
 0.687
F6R725_CIOIN
Uncharacterized protein.
   
 
 0.680
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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