STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6SXA9_CIOINPOLAc domain-containing protein. (1073 aa)    
Predicted Functional Partners:
F6Q9P9_CIOIN
Uncharacterized protein.
   
 
 0.865
LOC100176054
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
 
 0.703
LOC778981
Uncharacterized protein.
    
 
 0.636
LOC100183090
Triosephosphate isomerase.
    
 0.632
F6WLI7_CIOIN
Methyltranfer_dom domain-containing protein.
    
 
 0.552
F6WUQ7_CIOIN
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
   
 0.551
LOC100178968
DNA polymerase.
   
 0.546
F6S8K0_CIOIN
Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.
      
 0.528
F6USX3_CIOIN
Uncharacterized protein.
   
  
 0.519
H2XRH2_CIOIN
Uncharacterized protein.
   
    0.519
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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