STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6ZTS6_CIOINUncharacterized protein; Belongs to the actin family. (429 aa)    
Predicted Functional Partners:
LOC100180096
Dynactin subunit 4 isoform X2.
   
 0.995
LOC100180245
Dynactin subunit 6-like.
   
 0.995
F7APT3_CIOIN
Uncharacterized protein.
    
 0.990
LOC100177191
Uncharacterized protein LOC100177191.
    
 0.972
F7B690_CIOIN
CAP-Gly domain-containing protein.
    
 0.969
F6TVZ8_CIOIN
Uncharacterized protein; Belongs to the actin family.
   
0.962
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 0.929
capza
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 0.915
F7BML6_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 0.853
LOC100183636
Actin, muscle.
    
0.815
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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