STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6YKE7_CIOINUncharacterized protein. (83 aa)    
Predicted Functional Partners:
LOC100184303
Uncharacterized protein.
    
 0.636
LOC100182572
Bystin-like.
    
 0.538
F6RA65_CIOIN
RIO domain-containing protein.
    
 0.532
H2XXM6_CIOIN
Uncharacterized protein.
 
     0.495
F6ULD1_CIOIN
Uncharacterized protein.
 
     0.485
H2XWZ7_CIOIN
Uncharacterized protein.
 
     0.474
LOC100181824
Bms1-type G domain-containing protein.
    
 0.465
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.460
LOC100176033
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
    
 0.443
LOC100178383
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.439
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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