STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6W6K0_CIOINUncharacterized protein. (534 aa)    
Predicted Functional Partners:
H2XVQ2_CIOIN
Uncharacterized protein.
    
  0.787
LOC100184614
Uncharacterized protein.
 
 
 0.724
LOC100182742
Nucleolar RNA helicase 2.
   
 0.707
F6W8K8_CIOIN
Uncharacterized protein.
   
 0.695
LOC100182553
AP-2 complex subunit mu isoform X3; Belongs to the adaptor complexes medium subunit family.
    
 0.689
F6R544_CIOIN
Uncharacterized protein.
   
 0.667
F6ZEW6_CIOIN
Death domain-containing protein.
   
 0.667
H2XTN0_CIOIN
Uncharacterized protein.
   
 0.648
LOC100187027
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 0.644
F6XK10_CIOIN
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.626
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.