STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7AAA1_CIOINUncharacterized protein. (361 aa)    
Predicted Functional Partners:
LOC100187521
Uncharacterized protein.
    
 0.958
LOC100185043
Uncharacterized protein.
    
 0.953
Rbdlc
Dynein light chain roadblock.
    
 0.863
dynll6
Dynein light chain.
    
 0.855
LOC100180883
Tctex1 domain-containing protein 2-like.
    
 0.838
LOC100185458
Uncharacterized protein LOC100185458.
    
 0.835
dynlt1
Tctex1-related dynein light chain.
    
 0.787
H2XPM7_CIOIN
Dynein light chain.
    
 0.772
LOC100181451
Tctex1 domain-containing protein 1-B-like.
    
 0.767
dlc
Dynein light chain isoform X1.
    
 0.757
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.