STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6PJ75_CIOINSec2p domain-containing protein. (274 aa)    
Predicted Functional Partners:
LOC494428
Uncharacterized protein.
    
 0.840
F6R924_CIOIN
Uncharacterized protein.
    
 0.825
F6R906_CIOIN
Uncharacterized protein.
    
 0.825
H2XRU0_CIOIN
Sec8_exocyst domain-containing protein.
    
 0.813
LOC100184914
Uncharacterized protein.
    
 0.809
LOC100178018
Uncharacterized protein.
    
 0.809
LOC100175425
Ras-related protein Rab-11B-like.
    
 0.809
LOC100180447
Rab11 family-interacting protein 3-like.
   
 0.797
LOC100185758
Ras-related protein Rab-10-like.
    
 0.778
LOC100183241
Ras-related protein Rab-10-like isoform X1.
    
 0.778
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.