STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100182917Uncharacterized protein. (127 aa)    
Predicted Functional Partners:
F6YKR1_CIOIN
DNA_MISMATCH_REPAIR_2 domain-containing protein.
   
 0.934
LOC100182748
DNA_mis_repair domain-containing protein.
  
 0.801
F6ZUK0_CIOIN
DNA_mis_repair domain-containing protein.
  
 0.801
LOC100180400
Uncharacterized protein.
  
 0.791
LOC100184693
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.757
F7B169_CIOIN
MutL_C domain-containing protein.
  
 0.738
F7B162_CIOIN
Uncharacterized protein.
  
 0.738
F6QXW9_CIOIN
Helicase ATP-binding domain-containing protein.
    
 
 0.697
F6UAB2_CIOIN
FANCM-MHF_bd domain-containing protein.
    
 
 0.697
H2XN42_CIOIN
Uncharacterized protein.
    
 
 0.697
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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