STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178837Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (217 aa)    
Predicted Functional Partners:
LOC100177849
Golgin subfamily A member 7.
    
 0.905
F6YAH3_CIOIN
Uncharacterized protein.
    
 0.558
LOC100185283
Ras-related protein O-RAL isoform X2.
    
 0.542
F6RX41_CIOIN
Uncharacterized protein.
    
 
 0.447
F6VBZ6_CIOIN
Telo_bind domain-containing protein.
    
 0.445
LOC100179894
Werner syndrome ATP-dependent helicase homolog isoform X1.
    
 0.433
H2XKT2_CIOIN
3'-5' exonuclease domain-containing protein.
    
 0.433
H2XQ42_CIOIN
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
 
   
0.422
LOC100185814
Ras-related protein Rap-2a.
    
 0.401
LOC100179868
Uncharacterized protein.
    
 0.401
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.