STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180591Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins. (241 aa)    
Predicted Functional Partners:
LOC100185972
Uncharacterized protein.
  
 
 0.967
F6PJB8_CIOIN
Uncharacterized protein.
   
 0.964
F6WIR9_CIOIN
Uncharacterized protein.
    
 0.957
F7B391_CIOIN
Glyco_trans_2-like domain-containing protein.
   
 
0.955
LOC100183658
NTP_transferase domain-containing protein.
  
 0.938
F6X6G2_CIOIN
GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.
   
 0.874
F6TC27_CIOIN
NTP_transferase domain-containing protein.
  
 0.872
F6Q0G0_CIOIN
NTP_transferase domain-containing protein.
  
 0.872
F6WLA0_CIOIN
NAD(P)-bd_dom domain-containing protein.
  
 
 0.869
LOC100179457
methionyl-tRNA formyltransferase, mitochondrial.
  
 
 0.826
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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