STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7AIX9_CIOINUncharacterized protein. (402 aa)    
Predicted Functional Partners:
H2XU19_CIOIN
Uncharacterized protein.
 
     0.949
H2Y345_CIOIN
Uncharacterized protein.
 
     0.942
F6YDR3_CIOIN
Uncharacterized protein.
 
     0.941
H2XQF8_CIOIN
USP domain-containing protein; Belongs to the peptidase C19 family.
 
     0.927
zf(an1)-3
AN1-type domain-containing protein.
    
  0.600
F6YNL7_CIOIN
Ubiquitin-like domain-containing protein.
    
  0.600
F7B4Q5_CIOIN
Uncharacterized protein.
    
 0.529
smad4
Mothers against decapentaplegic homolog.
    
 0.494
H2XVQ2_CIOIN
Uncharacterized protein.
   
 
  0.456
F6WRI9_CIOIN
HECT domain-containing protein.
   
 
 0.445
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.