F6XMX2_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6XMX2_CIOIN

Uncharacterized protein. (279 aa)

Predicted Functional Partners:

LOC100175771

0.999

LOC100179869

0.999

F6WC79_CIOIN

0.972

LOC100181635

0.966

H2XJH5_CIOIN

0.954

H2XNP0_CIOIN

0.954

LOC100179894

0.953

H2XKT2_CIOIN

0.953

F7ATF3_CIOIN

0.939

LOC100179093

0.930

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6WC79_CIOIN	F6XMX2_CIOIN	ENSCINP00000017779	ENSCINP00000005706	Uncharacterized protein.	Uncharacterized protein.	0.972
F6WC79_CIOIN	F7ATF3_CIOIN	ENSCINP00000017779	ENSCINP00000009323	Uncharacterized protein.	zf-4CXXC_R1 domain-containing protein.	0.939
F6WC79_CIOIN	H2XJH5_CIOIN	ENSCINP00000017779	ENSCINP00000029807	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.955
F6WC79_CIOIN	H2XKT2_CIOIN	ENSCINP00000017779	ENSCINP00000030264	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.974
F6WC79_CIOIN	H2XNP0_CIOIN	ENSCINP00000017779	ENSCINP00000031273	Uncharacterized protein.	Uncharacterized protein.	0.955
F6WC79_CIOIN	LOC100175771	ENSCINP00000017779	ENSCINP00000010009	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.990
F6WC79_CIOIN	LOC100179093	ENSCINP00000017779	ENSCINP00000035496	Uncharacterized protein.	AAA domain-containing protein.	0.998
F6WC79_CIOIN	LOC100179869	ENSCINP00000017779	ENSCINP00000011013	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.981
F6WC79_CIOIN	LOC100179894	ENSCINP00000017779	ENSCINP00000004562	Uncharacterized protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.974
F6WC79_CIOIN	LOC100181635	ENSCINP00000017779	ENSCINP00000011627	Uncharacterized protein.	AAA domain-containing protein.	0.998
F6XMX2_CIOIN	F6WC79_CIOIN	ENSCINP00000005706	ENSCINP00000017779	Uncharacterized protein.	Uncharacterized protein.	0.972
F6XMX2_CIOIN	F7ATF3_CIOIN	ENSCINP00000005706	ENSCINP00000009323	Uncharacterized protein.	zf-4CXXC_R1 domain-containing protein.	0.939
F6XMX2_CIOIN	H2XJH5_CIOIN	ENSCINP00000005706	ENSCINP00000029807	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.954
F6XMX2_CIOIN	H2XKT2_CIOIN	ENSCINP00000005706	ENSCINP00000030264	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.953
F6XMX2_CIOIN	H2XNP0_CIOIN	ENSCINP00000005706	ENSCINP00000031273	Uncharacterized protein.	Uncharacterized protein.	0.954
F6XMX2_CIOIN	LOC100175771	ENSCINP00000005706	ENSCINP00000010009	Uncharacterized protein.	Cell cycle checkpoint control protein; Belongs to the rad9 family.	0.999
F6XMX2_CIOIN	LOC100179093	ENSCINP00000005706	ENSCINP00000035496	Uncharacterized protein.	AAA domain-containing protein.	0.930
F6XMX2_CIOIN	LOC100179869	ENSCINP00000005706	ENSCINP00000011013	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.999
F6XMX2_CIOIN	LOC100179894	ENSCINP00000005706	ENSCINP00000004562	Uncharacterized protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.953
F6XMX2_CIOIN	LOC100181635	ENSCINP00000005706	ENSCINP00000011627	Uncharacterized protein.	AAA domain-containing protein.	0.966