STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100186455Uncharacterized protein LOC100186455 isoform X3. (384 aa)    
Predicted Functional Partners:
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.840
LOC100184877
Uromodulin-like isoform X1.
  
 
  0.569
F6QD58_CIOIN
ZP domain-containing protein.
  
 
  0.539
LOC100184343
Uromodulin-like.
  
     0.533
F7B5T8_CIOIN
ZP domain-containing protein.
  
     0.526
LOC100177281
Uromodulin-like.
  
   
 0.502
clip-like
TILa domain-containing protein.
  
     0.460
H2XN57_CIOIN
VWFA domain-containing protein.
  
  
  0.424
H2Y251_CIOIN
Sulfotransferase; Belongs to the sulfotransferase 1 family.
  
  
  0.409
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.