STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6PPJ1_CIOINProtein kinase C. (582 aa)    
Predicted Functional Partners:
F6SA56_CIOIN
PDZ domain-containing protein.
    
 0.991
LOC100175009
Partitioning defective protein 6.
   
 0.990
H2XLB3_CIOIN
Uncharacterized protein.
 
  
 0.919
H2XXC7_CIOIN
Phorbol-ester/DAG-type domain-containing protein.
 
  
 0.918
F6R815_CIOIN
LLGL domain-containing protein.
    
 
 0.815
F6R808_CIOIN
Uncharacterized protein.
    
 
 0.815
Numb
PID domain-containing protein.
    
 
 0.802
rhoc
RhoA protein.
   
 0.787
H2XY43_CIOIN
Uncharacterized protein.
 
  
   0.779
F6W9U8_CIOIN
PB1 domain-containing protein.
    
 0.726
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.