STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Z5N9_CIOINRhomboid domain-containing protein. (213 aa)    
Predicted Functional Partners:
LOC100187157
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 
 0.864
LOC100181904
Rhomboid protein 1, mitochondrial.
      
 0.642
LOC100186373
G1/S-specific cyclin-D2-like; Belongs to the cyclin family.
      
 0.642
F6YHT4_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 
 0.613
F6YHD5_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
    
 
 0.613
H2Y2K4_CIOIN
3-hydroxy-3-methylglutaryl coenzyme A reductase.
   
  
 0.538
LOC100183827
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
 
      0.536
F6RE18_CIOIN
ATP synthase subunit gamma.
   
  
 0.531
LOC100186389
Transmembrane protein 214-A.
      
 0.529
H2XN70_CIOIN
Uncharacterized protein.
      
 0.509
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.