STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100177796Protein kinase domain-containing protein. (308 aa)    
Predicted Functional Partners:
LOC100184788
Non-specific serine/threonine protein kinase.
  
 
0.936
H2XT58_CIOIN
KA1 domain-containing protein.
 
      0.778
LOC100184659
AMPKBI domain-containing protein.
    
 0.670
F6UCD8_CIOIN
Uncharacterized protein.
   
 0.641
F7BH38_CIOIN
Uncharacterized protein.
   
 0.641
LOC100181538
Uncharacterized protein.
    
 0.580
LOC100184552
Uncharacterized protein; Belongs to the calmodulin family.
    
 0.557
LOC494376
Calmodulin-like.
    
 0.557
Cam
Calmodulin; Calmodulin mediates the control of a large number of enzymes, ion channels and other proteins by Ca(2+). Among the enzymes to be stimulated by the calmodulin-Ca(2+) complex are a number of protein kinases and phosphatases.
    
 0.557
F6T2A6_CIOIN
Uncharacterized protein; Belongs to the calmodulin family.
    
 0.557
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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