neurogenin protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

neurogenin

Transcription factor protein isoform X1. (409 aa)

Predicted Functional Partners:

e12/e47

0.734

H2XPI2_CIOIN

0.669

F7A2X8_CIOIN

0.650

F6YH17_CIOIN

0.624

SoxB1

0.599

Pax6

0.594

soxB2

0.532

wnt3

0.530

soxC

0.525

usf

0.522

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6YH17_CIOIN	e12/e47	ENSCINP00000010771	ENSCINP00000019396	BHLH domain-containing protein.	Transcription factor protein.	0.894
F6YH17_CIOIN	neurogenin	ENSCINP00000010771	ENSCINP00000008328	BHLH domain-containing protein.	Transcription factor protein isoform X1.	0.624
F7A2X8_CIOIN	neurogenin	ENSCINP00000015809	ENSCINP00000008328	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	Transcription factor protein isoform X1.	0.650
H2XPI2_CIOIN	neurogenin	ENSCINP00000031566	ENSCINP00000008328	C2H2-type domain-containing protein.	Transcription factor protein isoform X1.	0.669
Pax6	SoxB1	ENSCINP00000013350	ENSCINP00000012400	Uncharacterized protein.	HMG box domain-containing protein.	0.478
Pax6	neurogenin	ENSCINP00000013350	ENSCINP00000008328	Uncharacterized protein.	Transcription factor protein isoform X1.	0.594
SoxB1	Pax6	ENSCINP00000012400	ENSCINP00000013350	HMG box domain-containing protein.	Uncharacterized protein.	0.478
SoxB1	e12/e47	ENSCINP00000012400	ENSCINP00000019396	HMG box domain-containing protein.	Transcription factor protein.	0.443
SoxB1	neurogenin	ENSCINP00000012400	ENSCINP00000008328	HMG box domain-containing protein.	Transcription factor protein isoform X1.	0.599
SoxB1	soxC	ENSCINP00000012400	ENSCINP00000016177	HMG box domain-containing protein.	HMG transcription factor SoxC isoform X1.	0.561
e12/e47	F6YH17_CIOIN	ENSCINP00000019396	ENSCINP00000010771	Transcription factor protein.	BHLH domain-containing protein.	0.894
e12/e47	SoxB1	ENSCINP00000019396	ENSCINP00000012400	Transcription factor protein.	HMG box domain-containing protein.	0.443
e12/e47	neurogenin	ENSCINP00000019396	ENSCINP00000008328	Transcription factor protein.	Transcription factor protein isoform X1.	0.734
e12/e47	usf	ENSCINP00000019396	ENSCINP00000016663	Transcription factor protein.	Transcription factor protein.	0.559
neurogenin	F6YH17_CIOIN	ENSCINP00000008328	ENSCINP00000010771	Transcription factor protein isoform X1.	BHLH domain-containing protein.	0.624
neurogenin	F7A2X8_CIOIN	ENSCINP00000008328	ENSCINP00000015809	Transcription factor protein isoform X1.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.650
neurogenin	H2XPI2_CIOIN	ENSCINP00000008328	ENSCINP00000031566	Transcription factor protein isoform X1.	C2H2-type domain-containing protein.	0.669
neurogenin	Pax6	ENSCINP00000008328	ENSCINP00000013350	Transcription factor protein isoform X1.	Uncharacterized protein.	0.594
neurogenin	SoxB1	ENSCINP00000008328	ENSCINP00000012400	Transcription factor protein isoform X1.	HMG box domain-containing protein.	0.599
neurogenin	e12/e47	ENSCINP00000008328	ENSCINP00000019396	Transcription factor protein isoform X1.	Transcription factor protein.	0.734