STRINGSTRING
neurogenin protein (Ciona intestinalis) - STRING interaction network
"neurogenin" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neurogeninTranscription factor protein (409 aa)    
Predicted Functional Partners:
e12/e47
Transcription factor protein (641 aa)
       
 
  0.685
soxB1
HMG transcription factor SoxB1 (414 aa)
     
   
  0.496
ENSCING00000005021
Transcription factor protein (333 aa)
       
  0.474
LOC778534
Transcription factor protein (298 aa)
           
  0.438
delta
Delta protein ; Putative Notch ligand involved in the mediation of Notch signaling (706 aa)
           
  0.436
phox2
Homeodomain protein Phox2 (154 aa)
           
  0.432
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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