STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmg1/2Transcription factor protein. (204 aa)    
Predicted Functional Partners:
F7ADE5_CIOIN
APG6 domain-containing protein.
    
 0.929
LOC100183843
Histone H2A; Belongs to the histone H2A family.
   
 0.602
F6XT34_CIOIN
HMG box domain-containing protein.
   
   0.595
LOC100185398
Actin-like protein 6B; Belongs to the actin family.
   
 0.576
F6RMT1_CIOIN
Uncharacterized protein.
    
 0.562
LOC100183367
RuvB-like helicase; Belongs to the RuvB family.
    
 0.558
LOC100183594
General transcription and DNA repair factor IIH helicase subunit XPB.
   
 0.551
jun
Transcription factor protein.
   
 0.549
LOC100184165
General transcription factor IIH subunit 3-like.
    
 0.546
Rbp1-like
ARID domain-containing protein.
    
 0.528
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.