STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6UHT2_CIOINUncharacterized protein. (561 aa)    
Predicted Functional Partners:
F6VR09_CIOIN
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.968
LOC101242316
3-ketoacyl-CoA thiolase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.965
LOC100181980
Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.961
F6U222_CIOIN
Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.
   
 0.957
LOC100186995
enoyl-CoA hydratase, mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.952
LOC100180564
Peroxisomal bifunctional enzyme-like isoform X1.
 
 0.947
LOC100182913
Peroxisomal bifunctional enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.947
LOC100180056
Long-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform X3.
  
0.929
LOC100186673
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 
 0.913
F6TZ79_CIOIN
Acyl-CoA_dh_M domain-containing protein.
     
 0.913
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.