STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100181934Activator of basal transcription 1. (243 aa)    
Predicted Functional Partners:
F7AG76_CIOIN
Uncharacterized protein.
   
 
 0.981
H2XJZ4_CIOIN
RNA helicase.
   
 
 0.970
LOC100182572
Bystin-like.
   
 
 0.967
LOC100187445
Probable ATP-dependent RNA helicase DDX49 isoform X1; Belongs to the DEAD box helicase family.
   
 
 0.965
LOC100178413
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.965
H2XW54_CIOIN
NUC153 domain-containing protein.
   
 
 0.961
LOC100180269
Uncharacterized protein.
   
 
 0.958
H2XTN0_CIOIN
Uncharacterized protein.
   
 
 0.953
LOC100184042
Uncharacterized protein.
   
 
 0.939
F6YDG7_CIOIN
Uncharacterized protein.
   
 
 0.929
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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