STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F7ATF3_CIOINzf-4CXXC_R1 domain-containing protein. (286 aa)    
Predicted Functional Partners:
LOC100179894
Werner syndrome ATP-dependent helicase homolog isoform X1.
   
 0.951
H2XKT2_CIOIN
3'-5' exonuclease domain-containing protein.
   
 0.951
F6XMX2_CIOIN
Uncharacterized protein.
    
 0.939
LOC100179869
Checkpoint protein; Belongs to the HUS1 family.
    
 0.939
F6WC79_CIOIN
Uncharacterized protein.
   
 0.939
LOC100181635
AAA domain-containing protein.
   
 0.925
LOC100181422
Replication factor C subunit 2-like.
   
 0.922
LOC100184859
Replication factor C subunit 3-like.
   
 0.911
H2XJH5_CIOIN
ANK_REP_REGION domain-containing protein.
    
 0.888
H2XNP0_CIOIN
Uncharacterized protein.
    
 0.888
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.