STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6QN19_CIOINUncharacterized protein. (217 aa)    
Predicted Functional Partners:
LOC100184133
Uncharacterized protein.
    
 0.873
F7AP04_CIOIN
Uncharacterized protein.
    
 
 0.613
F6WVX7_CIOIN
ANK_REP_REGION domain-containing protein.
   
 
 0.605
LOC100187157
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 
 0.583
F7A5L4_CIOIN
MPN domain-containing protein.
   
 
 0.558
F6WFN8_CIOIN
RING-type domain-containing protein.
      
 0.543
LOC100181596
Probable nuclear transport factor 2.
      
 0.474
F6YHT4_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 
 0.469
F6YHD5_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 
 0.469
F7BBT3_CIOIN
Tr-type G domain-containing protein.
      
 0.453
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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