STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6PWM6_CIOINProtein-histidine N-methyltransferase. (488 aa)    
Predicted Functional Partners:
LOC100179624
Histone-lysine N-methyltransferase SMYD3.
     
 0.639
F6VYY7_CIOIN
Uncharacterized protein.
     
 0.634
LOC100177315
Carnosine N-methyltransferase.
      
 0.631
LOC100181185
Protein BCCIP homolog; Belongs to the BCP1 family.
   
 
 0.513
F6QD73_CIOIN
SET domain-containing protein.
    
 
 0.477
F6SN53_CIOIN
Uncharacterized protein.
   
  
 0.473
LOC100176855
AAA domain-containing protein.
    
 0.472
smyd1
Uncharacterized protein.
     
 0.470
H2XTY2_CIOIN
Uncharacterized protein.
     
 0.465
F7BQ53_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
    0.439
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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