nf-x-like protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

nf-x-like

Transcription factor protein isoform X1. (1123 aa)

Predicted Functional Partners:

LOC100180815

0.708

LOC100184468

0.537

LOC100180777

0.508

LOC100176054

0.499

H2XPH6_CIOIN

0.499

LOC100186345

0.488

F7B3P4_CIOIN

0.484

H2XPT9_CIOIN

0.475

LOC100176168

0.475

F6YMZ5_CIOIN

0.470

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6YMZ5_CIOIN	F7B3P4_CIOIN	ENSCINP00000004592	ENSCINP00000017031	Uncharacterized protein.	Uncharacterized protein.	0.775
F6YMZ5_CIOIN	H2XPH6_CIOIN	ENSCINP00000004592	ENSCINP00000031560	Uncharacterized protein.	Uncharacterized protein.	0.695
F6YMZ5_CIOIN	H2XPT9_CIOIN	ENSCINP00000004592	ENSCINP00000031673	Uncharacterized protein.	Peptidylprolyl isomerase.	0.459
F6YMZ5_CIOIN	LOC100176168	ENSCINP00000004592	ENSCINP00000036043	Uncharacterized protein.	Peptidylprolyl isomerase.	0.459
F6YMZ5_CIOIN	LOC100180777	ENSCINP00000004592	ENSCINP00000007443	Uncharacterized protein.	serine/Arginine-related protein 53-like.	0.986
F6YMZ5_CIOIN	LOC100180815	ENSCINP00000004592	ENSCINP00000026740	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
F6YMZ5_CIOIN	LOC100184468	ENSCINP00000004592	ENSCINP00000014372	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
F6YMZ5_CIOIN	LOC100186345	ENSCINP00000004592	ENSCINP00000019124	Uncharacterized protein.	60S ribosomal protein L7a.	0.999
F6YMZ5_CIOIN	nf-x-like	ENSCINP00000004592	ENSCINP00000009826	Uncharacterized protein.	Transcription factor protein isoform X1.	0.470
F7B3P4_CIOIN	F6YMZ5_CIOIN	ENSCINP00000017031	ENSCINP00000004592	Uncharacterized protein.	Uncharacterized protein.	0.775
F7B3P4_CIOIN	LOC100180777	ENSCINP00000017031	ENSCINP00000007443	Uncharacterized protein.	serine/Arginine-related protein 53-like.	0.546
F7B3P4_CIOIN	LOC100180815	ENSCINP00000017031	ENSCINP00000026740	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.783
F7B3P4_CIOIN	LOC100184468	ENSCINP00000017031	ENSCINP00000014372	Uncharacterized protein.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.546
F7B3P4_CIOIN	LOC100186345	ENSCINP00000017031	ENSCINP00000019124	Uncharacterized protein.	60S ribosomal protein L7a.	0.546
F7B3P4_CIOIN	nf-x-like	ENSCINP00000017031	ENSCINP00000009826	Uncharacterized protein.	Transcription factor protein isoform X1.	0.484
H2XPH6_CIOIN	F6YMZ5_CIOIN	ENSCINP00000031560	ENSCINP00000004592	Uncharacterized protein.	Uncharacterized protein.	0.695
H2XPH6_CIOIN	LOC100176054	ENSCINP00000031560	ENSCINP00000014188	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.543
H2XPH6_CIOIN	nf-x-like	ENSCINP00000031560	ENSCINP00000009826	Uncharacterized protein.	Transcription factor protein isoform X1.	0.499
H2XPT9_CIOIN	F6YMZ5_CIOIN	ENSCINP00000031673	ENSCINP00000004592	Peptidylprolyl isomerase.	Uncharacterized protein.	0.459
H2XPT9_CIOIN	LOC100180815	ENSCINP00000031673	ENSCINP00000026740	Peptidylprolyl isomerase.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.501