STRINGSTRING
ush2a protein (Ciona intestinalis) - STRING interaction network
"ush2a" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ush2aUncharacterized protein (5108 aa)    
Predicted Functional Partners:
ENSCING00000020353
Uncharacterized protein (402 aa)
     
  0.737
ENSCING00000022078
Uncharacterized protein (1201 aa)
     
  0.737
ENSCING00000019321
Uncharacterized protein (296 aa)
     
  0.628
ENSCING00000019467
Uncharacterized protein (217 aa)
     
  0.628
perlecan
Uncharacterized protein (502 aa)
     
  0.628
lamb1
Uncharacterized protein (1602 aa)
     
0.619
ENSCING00000007401
Uncharacterized protein (617 aa)
     
0.614
ENSCING00000019553
Uncharacterized protein (310 aa)
     
0.609
ENSCING00000013138
Uncharacterized protein (1903 aa)
     
0.510
ENSCING00000009362
Integrin beta (827 aa)
     
  0.490
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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