F6TZ29_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6TZ29_CIOIN

Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (678 aa)

Predicted Functional Partners:

LOC100186367

0.999

LOC101242365

0.998

LOC100178444

0.955

LOC101243041

0.939

LOC100186746

0.939

atg5

0.875

LOC100175499

0.855

F6RGX1_CIOIN

0.835

LOC100176463

0.816

LOC100185384

0.798

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RGX1_CIOIN	F6TZ29_CIOIN	ENSCINP00000011978	ENSCINP00000010014	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.835
F6RGX1_CIOIN	LOC100176463	ENSCINP00000011978	ENSCINP00000016116	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.802
F6TZ29_CIOIN	F6RGX1_CIOIN	ENSCINP00000010014	ENSCINP00000011978	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.835
F6TZ29_CIOIN	LOC100175499	ENSCINP00000010014	ENSCINP00000023092	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	WD_REPEATS_REGION domain-containing protein.	0.855
F6TZ29_CIOIN	LOC100176463	ENSCINP00000010014	ENSCINP00000016116	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.816
F6TZ29_CIOIN	LOC100178444	ENSCINP00000010014	ENSCINP00000034689	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Microtubule-associated proteins 1A/1B light chain 3B-like.	0.955
F6TZ29_CIOIN	LOC100185384	ENSCINP00000010014	ENSCINP00000010307	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	ubiquitin-60S ribosomal protein L40.	0.798
F6TZ29_CIOIN	LOC100186367	ENSCINP00000010014	ENSCINP00000023257	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Gamma-aminobutyric acid receptor-associated protein.	0.999
F6TZ29_CIOIN	LOC100186746	ENSCINP00000010014	ENSCINP00000009344	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Autophagy-related protein 3.	0.939
F6TZ29_CIOIN	LOC101242365	ENSCINP00000010014	ENSCINP00000035340	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.998
F6TZ29_CIOIN	LOC101243041	ENSCINP00000010014	ENSCINP00000009336	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Autophagy_act_C domain-containing protein.	0.939
F6TZ29_CIOIN	atg5	ENSCINP00000010014	ENSCINP00000033358	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.875
LOC100175499	F6TZ29_CIOIN	ENSCINP00000023092	ENSCINP00000010014	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.855
LOC100175499	LOC100176463	ENSCINP00000023092	ENSCINP00000016116	WD_REPEATS_REGION domain-containing protein.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.459
LOC100175499	LOC100178444	ENSCINP00000023092	ENSCINP00000034689	WD_REPEATS_REGION domain-containing protein.	Microtubule-associated proteins 1A/1B light chain 3B-like.	0.795
LOC100175499	LOC100186367	ENSCINP00000023092	ENSCINP00000023257	WD_REPEATS_REGION domain-containing protein.	Gamma-aminobutyric acid receptor-associated protein.	0.829
LOC100175499	LOC100186746	ENSCINP00000023092	ENSCINP00000009344	WD_REPEATS_REGION domain-containing protein.	Autophagy-related protein 3.	0.867
LOC100175499	LOC101242365	ENSCINP00000023092	ENSCINP00000035340	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.990
LOC100175499	LOC101243041	ENSCINP00000023092	ENSCINP00000009336	WD_REPEATS_REGION domain-containing protein.	Autophagy_act_C domain-containing protein.	0.867
LOC100175499	atg5	ENSCINP00000023092	ENSCINP00000033358	WD_REPEATS_REGION domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.996

page 1 of 5

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About