Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6TYR7_CIOINUncharacterized protein. (567 aa)    
Predicted Functional Partners:
F6VW31_CIOIN
Uncharacterized protein.
      
 0.838
LOC104266814
ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.764
LOC100185836
ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.764
H2XP51_CIOIN
Uncharacterized protein.
      
 0.656
LOC100185206
Transmembrane protein 161B.
      
 0.638
H2XX22_CIOIN
Uncharacterized protein.
      
 0.575
F6XGY9_CIOIN
Uncharacterized protein.
      
 0.535
H2XX41_CIOIN
Uncharacterized protein.
      
 0.532
LOC779004
Transcription factor protein.
      
 0.524
LOC100184292
ADP-ribosylation factor-related protein 1-like.
      
 0.515
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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