Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6TYR4_CIOINUncharacterized protein. (759 aa)    
Predicted Functional Partners:
LOC100177957
Tyrosine-protein kinase RYK.
    
 0.523
dsh
Dishevelled homolog.
    
 0.520
LOC100184014
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
  0.495
H2XRJ3_CIOIN
Protein kinase domain-containing protein.
    
 0.407
H2XUQ8_CIOIN
Uncharacterized protein.
    
 0.407
F6QC67_CIOIN
Uncharacterized protein.
    
 0.400
H2XTV9_CIOIN
Uncharacterized protein.
    
 0.400
H2XWD4_CIOIN
Uncharacterized protein.
    
 0.400
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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