Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100176507Synaptobrevin homolog YKT6-like isoform X2; Belongs to the synaptobrevin family. (200 aa)    
Predicted Functional Partners:
LOC100181871
t-SNARE coiled-coil homology domain-containing protein.
    
 0.999
F6Z6E4_CIOIN
V-SNARE domain-containing protein.
    
 0.997
LOC100182843
Uncharacterized protein.
    
 0.996
F6SNI9_CIOIN
Uncharacterized protein.
   
 0.994
LOC100181776
BET1 homolog.
   
 0.994
F6Y3T4_CIOIN
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.991
LOC100186647
BET1-like protein isoform X2.
   
 0.990
H2XQZ1_CIOIN
Uncharacterized protein.
    
 0.989
LOC100184992
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.987
H2XU17_CIOIN
Longin domain-containing protein.
    
 0.987
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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