STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6TCE2_CIOINRibosomal_L2 domain-containing protein. (219 aa)    
Predicted Functional Partners:
H2XPC5_CIOIN
Ribosomal_L16 domain-containing protein.
  
 0.994
H2XRJ8_CIOIN
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
  
 0.991
LOC100179663
39S ribosomal protein L24, mitochondrial.
  
 0.988
LOC100176514
peptidyl-tRNA hydrolase ICT1, mitochondrial.
   
 0.988
LOC100184616
39S ribosomal protein L17, mitochondrial-like.
  
 0.986
LOC100187383
39S ribosomal protein L13, mitochondrial-like.
  
 0.985
LOC108949611
39S ribosomal protein L47, mitochondrial-like isoform X2.
   
 0.981
F6R725_CIOIN
Uncharacterized protein.
  
 0.981
LOC100186298
39S ribosomal protein L37, mitochondrial.
   
   0.981
F7AAT5_CIOIN
Uncharacterized protein.
   
 0.974
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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