Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6TC91_CIOINSMK-1 domain-containing protein. (813 aa)    
Predicted Functional Partners:
F6XG24_CIOIN
Uncharacterized protein.
   
 0.982
LOC100178929
Serine/threonine-protein phosphatase.
   
 
 0.970
LOC100178802
Transcription elongation factor SPT5.
   
   0.891
F6WZS8_CIOIN
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 
 0.870
F6WMB2_CIOIN
Uncharacterized protein.
    
 
 0.841
F6UYA6_CIOIN
Uncharacterized protein.
   
 
 0.735
LOC104266855
DNA-directed RNA polymerase III subunit RPC8-like.
    
   0.729
H2Y379_CIOIN
RPA_C domain-containing protein.
    
 
 0.729
F7ATZ1_CIOIN
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
      
 0.646
LOC100175631
Histone H2A; Belongs to the histone H2A family.
    
 
 0.625
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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