STRINGSTRING
smek1 protein (Ciona intestinalis) - STRING interaction network
"smek1" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smek1Uncharacterized protein (813 aa)    
Predicted Functional Partners:
ENSCING00000001988
Uncharacterized protein (180 aa)
     
  0.821
ENSCING00000022694
Serine/threonine-protein phosphatase (305 aa)
     
  0.802
ENSCING00000022613
Serine/threonine-protein phosphatase (305 aa)
     
  0.802
ENSCING00000004907
Serine/threonine-protein phosphatase (307 aa)
     
  0.802
ENSCING00000003986
Serine/threonine-protein phosphatase (314 aa)
     
  0.802
ENSCING00000002811
Uncharacterized protein ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (320 aa)
       
  0.790
supt5h
Uncharacterized protein (1047 aa)
     
      0.770
ENSCING00000018688
Uncharacterized protein (117 aa)
     
  0.673
ENSCING00000011285
Serine/threonine-protein phosphatase (241 aa)
     
  0.673
ENSCING00000015948
Serine/threonine-protein phosphatase (324 aa)
     
  0.613
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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